Scaffold Ga0211627_1003163

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211627_1003163

Scaffold Ga0211627_1003163

Overview

Basic Information
Taxon OID	3300020250 Open in IMG/M
Scaffold ID	Ga0211627_1003163 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000475 (ERX555986-ERR599129)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3274
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_068
Coordinates	Lat. (^o)	-31.0263	Long. (^o)	4.6977	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028528	Metagenome / Metatranscriptome	191	Y
F059019	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211627_10031634	F028528	AGGAGG	MSYFKKIIDWVLTAYEPEFRPKKVYKIKGKTYYLRKRKKRKXSVNILLK
Ga0211627_10031637	F059019	GGAG	MKKFLEYLTIGNAVIGTLMMVGAVGAIEIDKWLQGGVMALLGATMFMLALYSQELYKEAK

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