Scaffold Ga0211635_1015135

Overview

Basic Information

• Taxon OID: 3300020249
• Scaffold ID: Ga0211635_1015135
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000482 (ERX556038-ERR599056)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1370
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_068
• Coordinates
  • Lat. (^o): -31.0136
  • Long. (^o): 4.6932
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013897	Metagenome / Metatranscriptome	267	Y
F029784	Metagenome / Metatranscriptome	187	N
F056679	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211635_10151352	F056679	N/A	MKLVTHIDIHEKLDEDIQFQINNALGLWSSKNDADLYEDVRQYMLPYTLKSVEFEKNRPHSLTSFK
Ga0211635_10151353	F013897	AGCAGG	MNLTKDQLLAVINTIDFATDNDASYEEYTIIKSGTSDLDPIRDILYNEYIHQTQ
Ga0211635_10151354	F029784	AGGAG	MCTQIYAHPVEGYRCFANANKSQGTYYTCCDLDTKEIRYVTYIYDGYFMGYYLVQSAVKATENYGNCQEKIFLSSASNKWPYYKGNDDEYTIDRQYPMQYDIPSLDEVEYSYLDSLLTAGTSK