NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211635_1009109

Scaffold Ga0211635_1009109


Overview

Basic Information
Taxon OID3300020249 Open in IMG/M
Scaffold IDGa0211635_1009109 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000482 (ERX556038-ERR599056)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1847
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_068
CoordinatesLat. (o)-31.0136Long. (o)4.6932Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001993Metagenome / Metatranscriptome607Y
F004453Metagenome437Y
F014388Metagenome / Metatranscriptome263N

Sequences

Protein IDFamilyRBSSequence
Ga0211635_10091093F001993GGAMNSEQLRYKMKNLDELLPNRSVTNDEQFHELYSKLRDLIEDTNYNIDIVDMYTALHCAMEDFEMYA
Ga0211635_10091094F014388N/AMSSLHHENILEECFEVASESFRVNNKLTHEQLEELLSFSKGTYDAICSNAYKLFQDRCQ
Ga0211635_10091096F004453N/AMQNPFTEIELETIANAMDDYINYDDENLNTELLFGGLSVADRVNSIQTKIDELLKLMEVN

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