Basic Information | |
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Taxon OID | 3300020249 Open in IMG/M |
Scaffold ID | Ga0211635_1009109 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000482 (ERX556038-ERR599056) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1847 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_068 | |||||||
Coordinates | Lat. (o) | -31.0136 | Long. (o) | 4.6932 | Alt. (m) | Depth (m) | 50 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001993 | Metagenome / Metatranscriptome | 607 | Y |
F004453 | Metagenome | 437 | Y |
F014388 | Metagenome / Metatranscriptome | 263 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211635_10091093 | F001993 | GGA | MNSEQLRYKMKNLDELLPNRSVTNDEQFHELYSKLRDLIEDTNYNIDIVDMYTALHCAMEDFEMYA |
Ga0211635_10091094 | F014388 | N/A | MSSLHHENILEECFEVASESFRVNNKLTHEQLEELLSFSKGTYDAICSNAYKLFQDRCQ |
Ga0211635_10091096 | F004453 | N/A | MQNPFTEIELETIANAMDDYINYDDENLNTELLFGGLSVADRVNSIQTKIDELLKLMEVN |
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