Scaffold Ga0211635_1001027

Overview

Basic Information

• Taxon OID: 3300020249
• Scaffold ID: Ga0211635_1001027
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000482 (ERX556038-ERR599056)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6006
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_068
• Coordinates
  • Lat. (^o): -31.0136
  • Long. (^o): 4.6932
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018738	Metagenome / Metatranscriptome	233	Y
F024331	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211635_10010276	F018738	N/A	MTYQYYCCDTTDDRSFCFMAQDDMEAAYRADTMCKEWYNTTLKDVYLDKHANPNRRYRPYDKEILSQQL
Ga0211635_10010278	F024331	GAG	MIVPNLKPMYLLIKVEVDADTITNQCKAGAYAMNHCNRMEYELADWYYPDSEQYPYIAK