NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211635_1000388

Scaffold Ga0211635_1000388


Overview

Basic Information
Taxon OID3300020249 Open in IMG/M
Scaffold IDGa0211635_1000388 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000482 (ERX556038-ERR599056)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9705
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (64.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_068
CoordinatesLat. (o)-31.0136Long. (o)4.6932Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087114Metagenome110N
F087297Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0211635_100038820F087114AGGMTEVIDFKTKRMLSKHRKKQKEKVIDAEFDVDIVAKDLEKVINKHIKRKTHGFDIACALADVSVQFIHDTAPSVASAQHIILTALQQPLQEAIEYEKGELEDE
Ga0211635_100038824F087297AGGAGGMPVLVQYKIIDGFNEYNDYLIHQDDIDVTDEENLIIDLVGGDREDEGDYRTIEVVYAKSIGIKHAEFLQECFIAFPFGGKEWLRQLAIKQYDEENCLTVKERSE
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