Scaffold Ga0211584_1010470

Overview

Basic Information

• Taxon OID: 3300020248
• Scaffold ID: Ga0211584_1010470
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556118-ERR599141)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1355
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 6.0124
  • Long. (^o): 73.8985
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F003869	Metagenome / Metatranscriptome	464	Y
F030123	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211584_10104701	F030123	GAGG	MSAISTDGMDKWLDDAYPDLDRRKANMIYEIASLIKDDPDSAPVLVEELVDIMFDEQIDHIEDVIVNHFGVEVYPE
Ga0211584_10104702	F003869	AGGA	MAKRQYNRTHYYSIASMMTDEEVHQVWEIVGNALDRNGFTDADGELSIRVYDETLKKNVTNVIDKSLEVN
Ga0211584_10104706	F001479	N/A	VYDAWLIKNKLPHRCASEILYGADTKGRLTQNQSYWLESFISTWDVIAQNT