Scaffold Ga0211584_1007349

Overview

Basic Information

• Taxon OID: 3300020248
• Scaffold ID: Ga0211584_1007349
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556118-ERR599141)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1594
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 6.0124
  • Long. (^o): 73.8985
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F003869	Metagenome / Metatranscriptome	464	Y
F013776	Metagenome / Metatranscriptome	268	Y
F089049	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211584_10073491	F003869	N/A	MAKKQYNRTHFYSICSMMTDEEVHQVWEIVGNALDRNGFTDADGELSIRVYDETLKKNVVNVID
Ga0211584_10073493	F013776	GGAGG	MKEFCFTVTKTGYINVEADSIEDAEARLQENFGHYYVITDTGEELSNGWETTGEVELEEECAFNDYEEDF
Ga0211584_10073495	F001479	AGGAG	MSKEMLFLCDVYDAWLIKNKLPHRSACDILYGENACKLTPNQAYWLESFIATWDVIAEHC
Ga0211584_10073497	F089049	N/A	NDMGDKLLTLITDLGWEYQRMSRSGQEVFDEIHQLLGTIKEDEVYMEI