Scaffold Ga0211584_1006664

Overview

Basic Information

• Taxon OID: 3300020248
• Scaffold ID: Ga0211584_1006664
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556118-ERR599141)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1666
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 6.0124
  • Long. (^o): 73.8985
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F001479	Metagenome / Metatranscriptome	687	Y
F030123	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211584_10066643	F001479	AGGAG	MSKEMLFLCDVYDDWLDKNNLPHRSACDILYGTNACKLTPRQTYWLESFIATWDVISEHC
Ga0211584_10066644	F030123	AGGA	MSAISEDGMDKWLDDAYPSLDKRKANLIYEIASLINDDPLSAPVLIEELVEVMFDEQIDHIEDVIVNHFGVEVYPE
Ga0211584_10066645	F001026	GGAG	MKHTLELDDLELTALITHLEGQSEMMVESRLNCSNPSELPDREEVLLNLVYAKAFTIGWDAHINPKVDFNLHQNEDRIYKYK