Scaffold Ga0211584_1005354

Overview

Basic Information

• Taxon OID: 3300020248
• Scaffold ID: Ga0211584_1005354
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556118-ERR599141)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1849
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 6.0124
  • Long. (^o): 73.8985
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014114	Metagenome	265	Y
F056669	Metagenome	137	Y
F101298	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211584_10053542	F101298	AGGAG	MDRDFQKVLQALTVFDKKLTTLEDVVRQLAEANVNYATSQQELNKEQSELNKDLGEGIKMLGDNLAEVIQFLQKIGGNN
Ga0211584_10053544	F056669	N/A	MSLIKSYILSIEEMGYNPYKLNELSPEEWDNLLTKAMKQDSKLYGTLIWTRCKLKGEKYFESQNKKKGIN
Ga0211584_10053546	F014114	N/A	MKEYKATDPEMIQAQKDLAEMSNLSDRVISNDKDLFEELSTIQRKLCQISELKSHFLQRYEDILDEQHRLETQLCVFQHEMLHSFELVFRYYKTKKKGFK