Scaffold Ga0211584_1003312

Overview

Basic Information

• Taxon OID: 3300020248
• Scaffold ID: Ga0211584_1003312
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556118-ERR599141)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2314
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 6.0124
  • Long. (^o): 73.8985
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017657	Metagenome	239	Y
F033024	Metagenome / Metatranscriptome	178	Y
F082820	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211584_10033122	F082820	N/A	MRKLIDGLAIASFVLSLTTVGAIGFGYLALTNKTNQEKIKGYAIEKAQELLRDQLTKSIPSLPDATGDVVPTGPSNPLPTLPKF
Ga0211584_10033123	F017657	N/A	MEDNRKEALNKATKAKQKMAVEAEMMKQLQPTVPEVTAANIDMQPAINPNPKPDGPVINANVFNPGNLYPGISGNTKLAATWNPMMDPAAG
Ga0211584_10033127	F033024	N/A	QQQGQQFARPQMPVPPQPQAPENTGDFWNNFGALTDKDPANAWRYLNQAQQTPDIFRNKMLVME