Scaffold Ga0211584_1000516

Overview

Basic Information

• Taxon OID: 3300020248
• Scaffold ID: Ga0211584_1000516
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556118-ERR599141)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5498
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD8-C175 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 6.0124
  • Long. (^o): 73.8985
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032270	Metagenome	180	Y
F057285	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211584_100051611	F057285	AGGAG	MTKLILSIKTRNKSFNLLEQVYKDFGVVFHPKATVKSVENFIKEKANGKSTSEASSQIRQGNSQGKGLVGKAKEDKEQQKIISLEDTSDKVSSSYDLKREEKKL
Ga0211584_100051613	F032270	N/A	MPRPSTQIKKLAFICAKCFNDKADKLAWFFGSTLFNESLLCRTCWKGQFNLLAEKERKEWAFYDNKKPRKDC