NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211654_1040458

Scaffold Ga0211654_1040458


Overview

Basic Information
Taxon OID3300020247 Open in IMG/M
Scaffold IDGa0211654_1040458 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)720
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004819Metagenome / Metatranscriptome422Y
F054087Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0211654_10404581F004819AGGAGGMQYYPKDQDPRLDERSARFHARVLKEDLATLPYVPNTQNRDINIARASTHVTWDHDKDMWAEVDHLMINFYIKAKTTDERDDLEDKINRDVVELLKGPRYYESAKVYCTIDMHYPEDESIYDIVKVPAKDRKKAGWGISGKEGEITYYVTLHVQECNAMDLVV
Ga0211654_10404582F054087GGAGGMPKFRLLVDTDSIVEEAEHLEDLFKDGIEADTEQEAERLVQAKVEELMYGGPYYSITDEEDE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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