NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211654_1018805

Scaffold Ga0211654_1018805


Overview

Basic Information
Taxon OID3300020247 Open in IMG/M
Scaffold IDGa0211654_1018805 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1114
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055774Metagenome / Metatranscriptome138Y
F059370Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0211654_10188051F059370AGAAGMVNVYCVKVGKKYGREFVEKLKDSVSKYLTVEHKFNCFTDKVEEDYDIPVTHPELRGVFHKLTLFQFTGNCLYFDLDIDINDNIDFLTSEFDRLTVVNSSPWQQQSLKEPLKFRITQNTLVNSSIMRWTDERKILEKFLKHRDVYLRLYSGIDRFIYNEDIK
Ga0211654_10188052F055774AGGAGMAIFSGNIIEAYYANSDNDTIEVIYKQGEKAINHFLRVDYKDQDFKDLIKEYDTDKIAASTIARNRQYAKQLSDMVDQGIKSKTDVKQKVSVEEFIDSMLNFNSSDQQSAEILFALKVKVFENDKVKSCNDKDLKSSLRSAKTPVDLISIFKKING

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