NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211654_1017211

Scaffold Ga0211654_1017211


Overview

Basic Information
Taxon OID3300020247 Open in IMG/M
Scaffold IDGa0211654_1017211 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1170
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007119Metagenome / Metatranscriptome357Y
F012719Metagenome / Metatranscriptome278Y
F027814Metagenome193N

Sequences

Protein IDFamilyRBSSequence
Ga0211654_10172112F027814GGAGGMSKLKFNDLPKILDWIKEPSHAGHLFIVEQTLKSVKEDQFKVGTKVKFGRANGMKRMGVVVKLGPKKAVVDCSGAKWRVPYDLMDVVDE
Ga0211654_10172113F007119GGAMNKYQVIKDGKVLKEFDKPMDAAIFATNNEFGPGMSIVTNDKEASETWTHFDYKENL
Ga0211654_10172114F012719AGGAMNKLNFYLKWIATGFLMIGVGANSLAIYPLGPLATLAGGLCWLAVSIMWREAALITTNAVLSTITIVGLVYTYFH
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