NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211654_1013853

Scaffold Ga0211654_1013853


Overview

Basic Information
Taxon OID3300020247 Open in IMG/M
Scaffold IDGa0211654_1013853 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1317
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041247Metagenome / Metatranscriptome160N
F061913Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0211654_10138532F041247AGGAGMTDFYSVEAKTLKFDKEMIVDFYNTIDQTKWVHRQDKLPQYWPIDENNTFDRNHEFYKHLINNINVDVDEKRIYFSRIHPGGIPNHWDFENFTKLQFPVICDEPDNDWSKTPILMIDQFDQIVERVEHTNDTPIIYSANYMHGTAKSLKNKNDRITLVVDLKFWFERVKIKYYEGTLFTNNKAFWSMA
Ga0211654_10138533F061913N/ANQQWLIDVLDSLKPSDWVDGTSVTGVTWTVNECRNIPYENMWKDIVENSTLDFVGSSERGVEKKKPWCFFSKLPPGGINLHYDHRRWGAVLFPVKGKFHLTPQIFATENYTEIERFNFEKSKIHDNGTPVFFDSRVLHAVPTPIDDEEERVVFSVNIHTHPTEMYERAKNGTWLSKNTENIGVSND
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