Scaffold Ga0211654_1010529

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211654_1010529

Scaffold Ga0211654_1010529

Overview

Basic Information
Taxon OID	3300020247 Open in IMG/M
Scaffold ID	Ga0211654_1010529 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1527
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_102
Coordinates	Lat. (^o)	-5.2476	Long. (^o)	-85.3343	Alt. (m)		Depth (m)	40
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023756	Metagenome / Metatranscriptome	209	Y
F037204	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211654_10105293	F023756	N/A	MINPEFDHDWNDVSVFEKLPVRKTANPKRDDWKRDRKAARNAKRKIQEQSYG
Ga0211654_10105295	F037204	GGAG	MDVKIYKDLSMYDFAMDVYQKAMHMKHDHNVEHYDVQEIIHHLQFIHTMEKGNAD

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.