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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020247 Open in IMG/M |
| Scaffold ID | Ga0211654_1001145 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4869 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_102 | |||||||
| Coordinates | Lat. (o) | -5.2476 | Long. (o) | -85.3343 | Alt. (m) | Depth (m) | 40 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F032281 | Metagenome / Metatranscriptome | 180 | Y |
| F092099 | Metagenome / Metatranscriptome | 107 | Y |
| F093868 | Metagenome / Metatranscriptome | 106 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211654_10011453 | F093868 | N/A | MNKIKQFFKMIEDFLYDIYGMDKHMKKIVLLLLLPIFGYGQLASSGDGIDIDLVYSGTTDNANKPLNKVQVNDTIVVKLNLSNLSSNTITYVHVDVQYNVNAYARVAYSFDVPTNAQTSNGNWSGNGMKWTVNPNYDANDLWAQWSTQGGSYNEVAGWEVDHVEAVSLSGISGNYATLHFKVKDAGANHSYTDNIAMTMARVTDNTGTSEYTFPVGKVRGYDTMSITHTPLEDLDANIYIQATTNSNFDVTKVGVVVQQNGSPVSNNLYFDSGGQINVTEYITTSTDSYTLDFVTSYSATEWEALMDNVITISDVTLTLNELGKYGHDNAGTVFTTGIQYSAVDSDNNRDLTPQDAYNLLGHVIGSVDIIPDDGTGIFNNSFKPIKKADYDSWSIYKFKNNVTEPNHSVVHPITVDFSQSSYTENFKFGFIGDANGSHSSAVEGNAASSLTARSNNNYTVSSAPLMSYGQQVLADGIIQGEWSTAIEDGRVVATLRLLSTEVSALQLKVDYDNTVLTFEEAVFDTGNTVTNFASETNGRVNLGSIEQNGGEIETGDVFKVYFSGNVTSPVGLVSIFNTDAANTDGYRLILNLQ |
| Ga0211654_10011454 | F032281 | N/A | MSYNFQKWYYFWLFVLFLACAKDDYSDFQTLSPNLADNMSIEEPTGLKFQGSNITDGSKFNLKVLEAGEYSIEVRDYFKNLTSKSIINAQSGDNVLKFYTRALQDGDYTITIGKNGQEIHNVKLVIK |
| Ga0211654_10011457 | F092099 | N/A | MNNYINPISLIKEEISEATTFSQKSLIIFIAVWAAVLSTVVVGGVTTILYELITNPSTFDNATWGIFDTLG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |