Scaffold Ga0211654_1000296

Overview

Basic Information

• Taxon OID: 3300020247
• Scaffold ID: Ga0211654_1000296
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9721
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2476
  • Long. (^o): -85.3343
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019845	Metagenome / Metatranscriptome	227	N
F087039	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211654_100029614	F087039	N/A	MNKIFTLRCPKEDNKQYFSLEKHQYQNNLTVMVNDIVVFENINDAEENLPIVLSDQVLFDPNSVNTISLIYNISFGDIKEKTDVDFVFDSNSSICTTKFNRKNFVEGSEKLTDEYQVKLKVNDQTHTIDKTFHEGETKNISVQNFVDMDLPITVSLESKKQFMDSDDITYDQLEFEIQ
Ga0211654_10002963	F019845	N/A	MDKYTFSMRTGSKTKKTIRHTLDGGDAFQVVELVKFMEDALKHSRQRYQIRIEIESWDHRACRNFEKDILGEPHWKPLNFRYSKPSRSFLFTRK