Scaffold Ga0211654

Basic Information
Taxon OID	3300020247 Open in IMG/M
Scaffold ID	Ga0211654_1000157 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020247 Open in IMG/M

Scaffold ID

Ga0211654_1000157 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13044
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (90.62%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

13044

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (90.62%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_102
Coordinates	Lat. (^o)	-5.2476	Long. (^o)	-85.3343	Alt. (m)	Depth (m)	40
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_102

Coordinates

Lat. (^o)

-5.2476

Long. (^o)

-85.3343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F009070	Metagenome	323	Y
F029123	Metagenome	189	Y
F032681	Metagenome	179	Y
F037208	Metagenome	168	Y
F048640	Metagenome	148	N
F061779	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211654_100015710	F005813	GGAGG	MKLYKNSEGVWAGTQADARKYCGKDYQTVDVPTDKPNLLGFLNLHQVGSYTSNGKEEIQSEPDTYDKKAMSWFRWAHDCMLRGQYKDAEAMIYKGLKDDRTTTSDG
Ga0211654_100015711	F048640	GGAGG	MQPQGLHAHARIKFEPTRIQKQLECRLFGETFHNVAAAARKFDLSASTVYQWHHEGRHRETFPKTKRWDKWRTQHETIQKL
Ga0211654_100015712	F061779	GGAG	MLPDEMEAEKNRKMILAQADEIEILKRNVRDLQEQYQSALRHNKRLIEQNAEAMVIIGHKQQEIDSMEEV
Ga0211654_100015715	F032681	GAGG	MTKKWSLENMHTVRDLSKKLNIEVGMSTSMAVEEAMTYLTMSFHKRNVDSIKAAELLRWWLSDFQDKELEYFETRVDLAKQVKLVDTRRKEA
Ga0211654_100015716	F004493	AGGAGG	MQNAIVRNKALDFTDSEWGQLIEGNGLLLTWFIEWNKGDRQEANILEFFARKYQQSAGCEPYPMGGKVSLDGKYVSRDDDDLEPYFLINTPDGVGYIYPYAFVALPKKKGGHTIVRMD
Ga0211654_100015717	F037208	AGGAG	MFVILATKPLNDGTDGFRFNILGNKGIYRKRKIEKRYGKSQGDVMTGYHFGRRSLYITQAVPKRRLYHFAG
Ga0211654_10001572	F009070	AGGAG	MRLAVVIDVDGDIMYVPEGAVFENYPKPKLFYNLKDAEEERCKWNTGVIVDYDNNNRTVPMVRSFDDEERRRAEERARINKDDGTSTGQDSTQ
Ga0211654_10001578	F029123	AGGA	MSYEVWFGQDGNWFGYHSFKHRMDAVRYELRYLKMFPKLTVEIRKREHAY
Ga0211654_10001579	F006217	AGGA	MIELLLAMVEDTNQIQKYCMSKHDHWTGRAACVQELRQTQRKMEVERLRQFLKENPHYRYPGMALPNGKIKPLDVCWGSSRTYGTNKERIC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211654_1000157

Overview

Ecosystem & Geography

Associated Families

Sequences