Scaffold Ga0211707_1049195

Overview

Basic Information

• Taxon OID: 3300020246
• Scaffold ID: Ga0211707_1049195
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX555934-ERR599105)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 566
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7788
  • Long. (^o): -17.9098
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011410	Metagenome	291	Y
F015532	Metagenome / Metatranscriptome	254	Y
F023621	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211707_10491951	F023621	N/A	DEKRRDNMMEKRIDNVMKVMREAKDYECKMIWNKHLQKLFEIRKRKAYERLQDQARMVH
Ga0211707_10491952	F011410	AGGA	MKDFKIKLEWYTSNVLVWIVFAISIGLLIANTVTMYTLYGVIETMWHEMVQIKETNSALYQFIEEHRNDFD
Ga0211707_10491953	F015532	GAGG	MTLIKENKGVRKEVPSRMMCATFAIPIDGRKVTGTLDYTVSDTGVTPMAFWIKIKPTDSYLDRELRASGKLISR