Scaffold Ga0211707_1042333

Overview

Basic Information

• Taxon OID: 3300020246
• Scaffold ID: Ga0211707_1042333
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX555934-ERR599105)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 617
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7788
  • Long. (^o): -17.9098
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092017	Metagenome / Metatranscriptome	107	N
F102838	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211707_10423331	F102838	N/A	MDNSTFVDVKETDGTDVSYTVSAGDIVRVDPSGWAFASNGYIRVTSNGSEAADRKIILHFRHS
Ga0211707_10423332	F092017	AGGAG	MSMLLILKEGRNLDIESIPDQPLEPSFPIVNPTIKANDGLFALGAFGQAIFAAELVEEGA