Scaffold Ga0211707_1003524

Overview

Basic Information

• Taxon OID: 3300020246
• Scaffold ID: Ga0211707_1003524
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX555934-ERR599105)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2453
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7788
  • Long. (^o): -17.9098
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031250	Metagenome	183	Y
F057434	Metagenome	136	N
F061908	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211707_10035241	F061908	N/A	MITKTKIENCFTMTARQKKLYKSMSIQEQDMFDYLVHVEDRKPDDVFFFLHSTFQPSRDDFKKPSFADLSTKQVVNTCYELQLKDVA
Ga0211707_10035242	F057434	N/A	MFHLIYTRSNTEYYKGDVFESNYTLYRNIPYSELSKFLEMQKDPELLKECDTKYFEHQEKNGITDTCFHSEISIVDDEEYFKTYKYVYRSSYNGPSGLIPEEEDYFMDYGQKSNFMLIHDYNPNYTWFGKDWTQEMINAEYEKRELDNQARV
Ga0211707_10035243	F031250	AGG	MEGVYNKENLFAEFQMQKTNEDKVKFLKEMKQLKKDQPSMFRGTKISQKQFDNLIAEWSKDKPWAEINRQIKQAQKHQDDVDNILNND