Scaffold Ga0211707_1001850

Overview

Basic Information

• Taxon OID: 3300020246
• Scaffold ID: Ga0211707_1001850
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX555934-ERR599105)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3515
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7788
  • Long. (^o): -17.9098
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005533	Metagenome / Metatranscriptome	397	Y
F087331	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211707_10018502	F005533	N/A	MYTKNETALLTLISNINNQFYYIGEDNDKVAPVDVKKFTQYCVSFIDSLEIDHDGE
Ga0211707_10018503	F087331	GGAG	MTENRLWEYPEDNPYGECTYDGKVEVYFNICNLLTDAELNQVWDIVGKACDRNNIDTDGDQELSVRLYDDIVAEDNDD