Scaffold Ga0211711_1007226

Overview

Basic Information

• Taxon OID: 3300020245
• Scaffold ID: Ga0211711_1007226
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000459 (ERX556111-ERR599135)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1951
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_070
• Coordinates
  • Lat. (^o): -20.3976
  • Long. (^o): -3.2009
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004368	Metagenome / Metatranscriptome	441	Y
F004819	Metagenome / Metatranscriptome	422	Y
F085576	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211711_10072262	F004819	GGAGG	MEFYPKDKDPRLDERSARFHARVLKEDLATLPFVLDTCNRDINIARASTYVTWDHDKEMWCEVDHLMMNFYVKARTSETRDEIEDKINRGVVELLKGPRYYEQAKVYCRIDMDYPEDESIYDIVKVPKKKRKKAGWGITGGEGDIVYHVTLHVQECNNMDLTIYDDPNRGDFFDLNGNNLESPMADLERIVNGN
Ga0211711_10072263	F004368	AGGA	MGTRLADIIMDRHEDFLYEDSRAMKLTPYVMAERCLQAELTAIFLDGKEGDYSTLTYILEGGFKGFHNMEPSELIEEYKQIEEQWYELESSCELHWQPYEEDPIWQITERLKENFDRTGRTHG
Ga0211711_10072264	F085576	AGGA	MRQWYIRFKAGNFENGYYEIGENFDLVRDLCKSEFIKDCKALGFTPITAELTYCEENRI