NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211711_1000020

Scaffold Ga0211711_1000020


Overview

Basic Information
Taxon OID3300020245 Open in IMG/M
Scaffold IDGa0211711_1000020 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000459 (ERX556111-ERR599135)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30493
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (48.98%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_070
CoordinatesLat. (o)-20.3976Long. (o)-3.2009Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041143Metagenome / Metatranscriptome160N
F072256Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0211711_100002010F072256GGAVNIKNILARDQFVKFYPDEHRYYDLKNNKYVARSVSEVVRPNAFVNKNMEKAAERGTAIHEAIQIWSETKDIDLALSYAKKYTKWIKNLINYRMWNTWNIVASELRMIDRVNDIAGTLDAVLQHKETGLLCLADFKTQDKYKKKNHRLQIGGYVSLLNQNFNELDLFSCRVIYITPDEIRTEEYSPKECMYDYEVCRTEYLKKELELK
Ga0211711_100002020F041143GGAGGMSNPRIDGIDWRSLEKGDLIPEEHILDYWNTCYPKKEWDKFSMVTVKANIEKLREGINRPLVLKEVKGSLVVLTDKEAVDYSAAQANAGIKKHHRHTRRLFTHIDQTNLDQAKKRDLETKQIHHAFIASAADGARKESLQLQRKGERLPKSLIEKSEFKKSS
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