Scaffold Ga0211655_1008422

Overview

Basic Information

• Taxon OID: 3300020243
• Scaffold ID: Ga0211655_1008422
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX556050-ERR599055)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1762
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2771
  • Long. (^o): -85.2995
  • Depth (m): 480

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005103	Metagenome / Metatranscriptome	412	Y
F006146	Metagenome / Metatranscriptome	380	Y
F007055	Metagenome / Metatranscriptome	359	Y
F058211	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211655_10084221	F058211	N/A	MPVSIENNSWDYIQGIIEKEINSAFKLRMPEEEKKNIKFKNDHPYMKRLDEVLKQYSVVKVADDNGAHHGEDYEEMKQVILDALFTSY
Ga0211655_10084223	F005103	GAG	VQELKKENKATIRIYIDGKEMLYSHQNIVAAINNFLPYLTNDDLTTLGQDILDLFNHREAKEAESKIEVEKHSWPYPDTIQQLEND
Ga0211655_10084225	F006146	AGGA	MIITTTTILIVQAIVIGTIMWTTPEPCPRKYRVTQENGGVLVNAVDIHRYCKLDYGGKFILKEEYDE
Ga0211655_10084226	F007055	GAG	MIWIAIVLIWNPVVYTIDKEFSSEVNCWNYYEGGVGESKFGTQVLDHQGNTPGKEYHKKNRPPHREYPIRMYKGVNGWTRGLIWLTCDIKGRNEGL