Scaffold Ga0211701_1000383

Overview

Basic Information

• Taxon OID: 3300020242
• Scaffold ID: Ga0211701_1000383
• Source Dataset Name: Marine prokaryotic communities collected during Tara Oceans survey from station TARA_076 - TARA_B100000513 (ERX555995-ERR599010)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2150
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -21.0073
  • Long. (^o): -35.3344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F002374	Metagenome / Metatranscriptome	566	Y
F039389	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211701_10003831	F002374	N/A	MDQVLLYTSVILASVTFFLCLYALARVGKLLNSVKGLEWDTIATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNNVTDINKKNIGG
Ga0211701_10003832	F039389	AGGAGG	LAFLGDIGKVFGLGTSKQVLGGFGETVGDIFGIGGTGRRFGEAVAGATSNLAGGTADQPLEQSAVPTPGQNGGAQETSRTGSTTTNIIDVSGRTPTQQAGLGMLTPFLPQIAKIFGNRAVQTGLGAGAGIIAGQMGADGKVKPVLTQSRRNKARVRQLVNFLGIEGTADFLTQQGGVNVTPNDVVMLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEAVSMAKTTRRASPMRRASSTTLIKN
Ga0211701_10003833	F001611	AGGAGG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALTTGQPFGVLNGSYLNNDLITTGSQRNRVLVRFTNDTAATRTIRCGVFIG