Scaffold Ga0211494_1005450

Overview

Basic Information

• Taxon OID: 3300020240
• Scaffold ID: Ga0211494_1005450
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000477 (ERX556046-ERR598982)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2864
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_066
• Coordinates
  • Lat. (^o): -34.8477
  • Long. (^o): 18.1136
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000107	Metagenome / Metatranscriptome	2222	Y
F001156	Metagenome / Metatranscriptome	763	Y
F002166	Metagenome / Metatranscriptome	588	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211494_10054503	F002166	AGGTGG	MNQLSFQKFKSSLVELKEDSPKETAEFKKLSPAEKQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
Ga0211494_10054505	F000107	N/A	MTIANTKVVDSTSKYIVQSKGIGSETDQVLVDAEKLSSGNNKSLTSLIECFYIIKGTGTITLSASSEENDLTLTGKGKYGLRPDQLKFGNDKQILLTTDSNVESYLLVTEFRRNN
Ga0211494_10054507	F001156	N/A	MAKDNARAILERIVGIKGKGELADKFKLAFAEKYKIKQEEVKQGIVDKVYNKNKVEKT