Scaffold Ga0211494_1000071

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211494_1000071

Scaffold Ga0211494_1000071

Overview

Basic Information
Taxon OID	3300020240 Open in IMG/M
Scaffold ID	Ga0211494_1000071 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B000000477 (ERX556046-ERR598982)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	22017
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (42.86%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_066
Coordinates	Lat. (^o)	-34.8477	Long. (^o)	18.1136	Alt. (m)		Depth (m)	30
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007391	Metagenome / Metatranscriptome	352	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211494_100007126	F007391	N/A	MIEKILAGTLALSISGCSMLGGFNALDPKNLIKTAATTGATYVVAGPIPAAVNAATSVAVDSVLPDDKPQISEIEAGNEEQLRAFMFANLTETVLYGVIGFLIFTNVVGPWAAQRRARRKAEQAAIDQRRKDKYDAMKAELAARRSKD

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