Scaffold Ga0211501

Basic Information
Taxon OID	3300020239 Open in IMG/M
Scaffold ID	Ga0211501_1005154 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000003 (ERX555909-ERR598959)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020239 Open in IMG/M

Scaffold ID

Ga0211501_1005154 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000003 (ERX555909-ERR598959)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2829
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

2829

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_034
Coordinates	Lat. (^o)	18.4017	Long. (^o)	39.855	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_034

Coordinates

Lat. (^o)

18.4017

Long. (^o)

39.855

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F006217	Metagenome	378	Y
F018289	Metagenome	236	Y
F027536	Metagenome	194	Y
F029123	Metagenome	189	Y
F048640	Metagenome	148	N
F053632	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211501_10051541	F027536	GGAG	MRVYNYKVTPIDRVINECKRRADDAWWDGNDDEARLHEQEAKLHEEDRDERGYQWVPNF
Ga0211501_100515410	F004493	AGGAG	MQTSVTKNKELGFTDEQWGQLIDANGLLIMWFLEWNQKAKDNPLQILEFFARKYQQSAGCEPWPMGGKVSLDGKYVSKDDDDLEPYFMIDTPDGVGYIYPYAFVALPKKGGGHTVVRMD
Ga0211501_100515411	F018289	N/A	FTRSQLNLLRKQLQETIDNANLSDITIEVGNCSYSGGEATFKVKCTLKGAKTREQIDLEYYAELHQIDTTAIAKLQGEDMSIIGYKSRARKKPWILQRLRDGAEFVCSDQTAKAFFKKREEIADAN
Ga0211501_10051542	F029123	AGGAG	MSYEVWFGQNDKWFGYHSFKYKMDAQRYEERYIKMFPDLTVEIRERVHASV
Ga0211501_10051543	F006217	AGGAGG	MLEVLLAIAATQPDDNAITKYCMSKFEHWTDRAACGQQLRQIERELEVEALRKFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYGTSKERRC
Ga0211501_10051544	F053632	GAGG	MRLYKNSEGVWAGTQADARKMCGKGYQTVDVPTDKPSLLRFLNANKVGTSYTSNGKEFEPVYAPDTDLDKKALSYFEWGYDKLRNGEFADGTEFIRKALLYQKTHNMHEEDANA
Ga0211501_10051546	F048640	AGGA	MQPKELHAHARIKFEPTRVQKQLECRLFGETFRSVAAAARKFELSASTVYQWHHERKHRETFPKTKRWDKWRAEHEVADTNHANAG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211501_1005154

Overview

Ecosystem & Geography

Associated Families

Sequences