Scaffold Ga0211501_1001834

Overview

Basic Information

• Taxon OID: 3300020239
• Scaffold ID: Ga0211501_1001834
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000003 (ERX555909-ERR598959)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4674
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_034
• Coordinates
  • Lat. (^o): 18.4017
  • Long. (^o): 39.855
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067736	Metagenome	125	N
F077925	Metagenome	117	N
F085682	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211501_10018345	F085682	AGGAG	MSIDLSKYEKLIRLGTLTEEYEFAQHELHALLRLQRGGGTASLREDIIALLDRIARELSRRRVASDEQAEFVKRLP
Ga0211501_10018348	F077925	GGAG	MVNDVTEVLDWMATYQDEEDVNKRFKENLKDIVGDCFFSVRYYSQSKGRYENYGSLHLNVKKHLKGGESTAKDYTFTAYDLSAKHYRSFVISKTAFVKCGDMYTQDAILSGKKNVI
Ga0211501_10018349	F067736	AGG	MSFDPKNEKPLSAYTNEELLDFLGIKSTLEDVFRNYNMTDEQKREFLLEKAEEKNQKYY