Scaffold Ga0211501_1000545

Overview

Basic Information

• Taxon OID: 3300020239
• Scaffold ID: Ga0211501_1000545
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000003 (ERX555909-ERR598959)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7981
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_034
• Coordinates
  • Lat. (^o): 18.4017
  • Long. (^o): 39.855
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013639	Metagenome / Metatranscriptome	269	Y
F018155	Metagenome / Metatranscriptome	236	Y
F034894	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211501_100054514	F018155	AGGAG	MSQNKEAVEKRRKEIAEEKKDKQIKWIYFQRGAGKHYEEIAYMSGRIVRTDYGEL
Ga0211501_100054518	F034894	AGGAG	VSRNITFNLLGGGEINIPIRSISGFYKDDITGEVILEVCNEQYKLRDSLDEVKYLLGLAT
Ga0211501_10005453	F013639	N/A	MEIDKKKLKEKIEQGKSSHDVAMTFGCHPSTVKRKAKELGLKFKAKSHWRKYAS