Scaffold Ga0211501

Basic Information
Taxon OID	3300020239 Open in IMG/M
Scaffold ID	Ga0211501_1000010 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000003 (ERX555909-ERR598959)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020239 Open in IMG/M

Scaffold ID

Ga0211501_1000010 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000003 (ERX555909-ERR598959)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36629
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (82.14%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

36629

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (82.14%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_034
Coordinates	Lat. (^o)	18.4017	Long. (^o)	39.855	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_034

Coordinates

Lat. (^o)

18.4017

Long. (^o)

39.855

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003196	Metagenome / Metatranscriptome	501	Y
F003423	Metagenome / Metatranscriptome	487	Y
F020902	Metagenome / Metatranscriptome	221	Y
F022423	Metagenome / Metatranscriptome	214	Y
F023355	Metagenome / Metatranscriptome	210	Y
F025614	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211501_100001023	F022423	N/A	MQDLEFIANTIHSMTSNVQNKETLHKIIGTANEYAKTMKYPKSKTDWSDEQLTKYFDMIERLVELPVQYSQSDFDELTLEERLEAAGIEATDITPGLQDSSGIVGEVINNMAEQAKYRTDLKCPYCKQMVYDNRNSKRSDKSPDFTCSTNDPVTCGGHTGKWRKSWWLDNSDIPEEWGI
Ga0211501_100001027	F025614	AGGAG	MAKIDINKINIFTHHNYLKVWATQFSKACGSDTFNVPPDTKKLRFLMDKFVMDYNWHLEQLGEEE
Ga0211501_10000103	F020902	GGAG	MQHYFDREFWDLVYQEYGVTDELDILSENVLEILTPMPGIIVLITKDFHNGEEA
Ga0211501_100001035	F023355	N/A	MALPGAYVVNSPEPGKYCNNCVHYSNNNCIKFNKEVAPYGWCAVWQGYEV
Ga0211501_100001051	F003196	AGG	MQLSKQVLIDVSEDASNSTGVQCDGLLLSGIVFPAAMTGTTVSFDFSFDGSTWVDVVETDGTAVSYTVTAGDVVRVDPSGWAFATAGSLRVTSDATEAADRKIQLIFKQS
Ga0211501_100001053	F003423	GGAGG	MDEFDAPNEHGVKQMRETIDRKDDTIKKLEAELASYKDKEIDNVFGKLGLSTDKGFGKALKQVYDGPIDTESIAQFAKDEYGYESTGQVQEVTQPVVEPIVQDDARSRVAALDANSSSDVPLDVNEQLAQVLKGASVKDSLRAKLNIMDDVKNNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211501_1000010

Overview

Ecosystem & Geography

Associated Families

Sequences