Scaffold Ga0211492_1000211

Overview

Basic Information

• Taxon OID: 3300020238
• Scaffold ID: Ga0211492_1000211
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000475 (ERX556004-ERR599068)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12423
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_066
• Coordinates
  • Lat. (^o): -34.8986
  • Long. (^o): 18.03
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019562	Metagenome / Metatranscriptome	229	N
F028183	Metagenome / Metatranscriptome	192	N
F041247	Metagenome / Metatranscriptome	160	N
F061913	Metagenome / Metatranscriptome	131	N
F084452	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211492_100021110	F084452	GGAG	MINKLIWNKVEELFYWNISVDSPINQLPFTMDFILTCQKEFSMKVRDKEYPIHLGGIMDWHDKTMGDFVKEIDKQYQHNYFVAENGTSTTGVVGEIKDVNDKPITNKWNIRGEALVKRLQAMQKERPNLTILDMGCGVNEYKKHLNNVTGVDPYRKEADVICSQADFKPADDIKWDVIICFGPQNWYTYDEQYRNFMTLKNCLAPSGILLWSHVHNYYKVFQPDHPHGHTWIHGDLEHAQKNSAFYFYDRNWKYTWYFNWTEHAVNTLAGHVGLKINKVDYDHCNLYRPPMYRIFTEMTH
Ga0211492_100021112	F019562	AGG	MWYHKKFKLQYDTNVFNEIIEYAERATWRQGYDQNGLLWNVEELPLSPKQFPILNELYEGLNTEFKRPSFFISNVKPGGLVNHIDHNKWGNLGIPLKGDFENTPQYFYDQFNHPVESFIVDSPVIFNTRMLHAVPRQLTDTGPRWVLMMDLFEWVDKLFDKIDKKTIWTDTKNFKNA
Ga0211492_100021114	F028183	AGG	MTPEIRLTSLEETRSAPYCRELKTLWYDREYLLDHLENIDENNWYLFDCGHIRWTVQEAFNARRECKNYPFSEFHYELINLFTPAISFDTVLYTQTAIGGAPPHQDRNRPTALNFAIRGEFSDTSPQVFYDSFDRSTEKYRMTYEKNDITNEFAPWIFKGPEIHGVENKTEKNRIIITCAWRHNSYEDIEKRLLDGTLVNWEQNEKNKRIKFV
Ga0211492_10002118	F041247	AGGAG	VSDFYSVEAKTLKFDKEMIVDFYNTIDQTKWVHRQDKLPQYWPIDENNTFDRTHEFYKQLQQNINVDIDEDRIYFSRVHPGGIPNHWDFENFTKLQFPVICDEPDDDWSKTPILFIDQFDQIVERVEHTNNTPIIYSANYMHGTAKSLKNKNDRITLVVDLKFWFERVKIKYYEGTLFTNNKAFWSMA
Ga0211492_10002119	F061913	GGAG	MFEQGNFFVKCHNIYYDQQWLRDVLDSLKPSDWVDGTSVTGVTWTVEECRNIPYENMWKDIVENSTLDFVGSSERGVEKKKPWCFFSKLPPGGINLHYDHRRWGAVLFPVKGKFHLTPQIFATENYTEIERFNFEKSKIHNNGTPVFFDSRVLHAVPTPIDDDEERVVFSVNIHTHPTEMYKRAIDGTWLNKNTKNIGVSSE