Scaffold Ga0211492_1000010

Overview

Basic Information

• Taxon OID: 3300020238
• Scaffold ID: Ga0211492_1000010
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000475 (ERX556004-ERR599068)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31794
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (59.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_066
• Coordinates
  • Lat. (^o): -34.8986
  • Long. (^o): 18.03
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006643	Metagenome / Metatranscriptome	368	Y
F007391	Metagenome / Metatranscriptome	352	N
F029246	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211492_100001026	F007391	N/A	MIEKILAGTLALSISGCSMLGGFNALDPKNLIKTAATTGATYVVAGPIPAAVNAATSVAVDSVLPDDKPQISEIEAGNEEQLRAFMFANLTETVLYGVIGFLIFTNVVGPWAAQRRARRKAEQAAVDQRRKDKYDAMKAELAARRSKD
Ga0211492_100001039	F029246	AGGAG	MGSHWGLILFGLVALFATAFVKTAALLAIAYGAWKAYDDWGAQ
Ga0211492_100001041	F006643	GGA	MDSDTKLLEIENKLERMHAALQRQEKELDAWRDRSVRVPNWIRNGGVALFMAVLAQSMAAVWWASEIESKQANIIEDVQTNTEFRVTSTERYNEIMIQLTKMEVMMTNHFEQDKRN