Scaffold Ga0212228_1357125

Overview

Basic Information

• Taxon OID: 3300020235
• Scaffold ID: Ga0212228_1357125
• Source Dataset Name: Deep-sea sediment microbial communities from the Kermadec Trench, Pacific Ocean - N075
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: JGI facility at Oak Ridge National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1906
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Microbial Communities From The Pacific Ocean Trenches

Source Dataset Sampling Location

• Location Name: Kermadec Trench, Pacific Ocean
• Coordinates
  • Lat. (^o): -32.85037333
  • Long. (^o): -177.65414
  • Depth (m): 9177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011494	Metagenome / Metatranscriptome	290	Y
F014551	Metagenome	262	Y
F015147	Metagenome / Metatranscriptome	257	Y
F047110	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212228_13571252	F011494	N/A	MRKYSVVNEEGVVEEFVQLTGEADHAALNDAIELAGRAGEDVVEHLADGSRVVVWELSGEEPWEGEDRFADGDALASAGFGTDEDYGCFGDESFMGE
Ga0212228_13571253	F047110	N/A	MKTVVSINWKIRDLIREKLSFANWHKTVFGRPASRKVLSEIKAKGEELEQMKKAVLLSGGRTWPLGDQSGR
Ga0212228_13571254	F015147	N/A	MRKTTKKIKWLVNDLGLNELDAWLWMIGGAALTAAVLVLLIGEGPEVFRYWRVAVLNF
Ga0212228_13571256	F014551	GAG	MRDMFKFQYNPARHNGEVNHAGEVFDYLGVIVDHFRNTTEGETFSGVTVEIHDNEGPTGQTRRFRWDRIVGAVNLANTAQAMHGGRI