Scaffold Ga0212227_1225317

Overview

Basic Information

• Taxon OID: 3300020234
• Scaffold ID: Ga0212227_1225317
• Source Dataset Name: Deep-sea sediment microbial communities from the Kermadec Trench, Pacific Ocean - N074
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: JGI facility at Oak Ridge National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6567
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Microbial Communities From The Pacific Ocean Trenches

Source Dataset Sampling Location

• Location Name: Kermadec Trench, Pacific Ocean
• Coordinates
  • Lat. (^o): -34.34030667
  • Long. (^o): -178.1757117
  • Depth (m): 8081

Associated Families

Family	Category	Number of Sequences	3D Structure?
F105216	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212227_12253174	F105216	GGAG	MRALSEKFSHIAEAYAVVDVCMPMIDANKDAKRSVISKIEIRHYSQLSRMDTEAELANFFAYHRQDGGTDEQAAELDRIYRESHQAAARLLKSLDGCVETATDYANTILNTKVRSAP