NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212226_181061

Scaffold Ga0212226_181061


Overview

Basic Information
Taxon OID3300020232 Open in IMG/M
Scaffold IDGa0212226_181061 Open in IMG/M
Source Dataset NameDeep-sea sediment microbial communities from the Mariana Trench, Pacific Ocean - CR05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJGI facility at Oak Ridge National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1158
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Microbial Communities From The Pacific Ocean Trenches

Source Dataset Sampling Location
Location NameMariana Trench, Pacific Ocean
CoordinatesLat. (o)11.54708Long. (o)144.55847Alt. (m)Depth (m)7942
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034209Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0212226_1810612F034209N/AMSVDLKELIDHDHSDECPVCRAQDIVQSALLPAASAWEANDELPRFSVALQGAAELLGVMLEEGISREDIESALGQLLDDIELRIAEDKALGGPTMGSA

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