NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212168_1323043

Scaffold Ga0212168_1323043


Overview

Basic Information
Taxon OID3300020231 Open in IMG/M
Scaffold IDGa0212168_1323043 Open in IMG/M
Source Dataset NameDeep-sea sediment microbial communities from the Mariana Trench, Pacific Ocean - CR04
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJGI facility at Oak Ridge National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3636
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Microbial Communities From The Pacific Ocean Trenches

Source Dataset Sampling Location
Location NameMariana Trench, Pacific Ocean
CoordinatesLat. (o)12.47649Long. (o)144.86485Alt. (m)Depth (m)7939
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074900Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0212168_13230437F074900AGGAGMAAKIVNLANPDEDETSCATVEEARETLAAMIEKFKSQGYRIDEQHIPDEDSPQYAVYDRDDAWIGTYTIEPQ

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