Scaffold Ga0212168_1289700

Overview

Basic Information

• Taxon OID: 3300020231
• Scaffold ID: Ga0212168_1289700
• Source Dataset Name: Deep-sea sediment microbial communities from the Mariana Trench, Pacific Ocean - CR04
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: JGI facility at Oak Ridge National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2193
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Microbial Communities From The Pacific Ocean Trenches

Source Dataset Sampling Location

• Location Name: Mariana Trench, Pacific Ocean
• Coordinates
  • Lat. (^o): 12.47649
  • Long. (^o): 144.86485
  • Depth (m): 7939

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020359	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212168_12897002	F020359	AGGAG	MAVSKRTGGRKAAEEFWSKVLAAPKVKRILEKRGFSPEAFQRDYEADTSRGPRTPKRPSRGQIDAVEAFQRSGDFEALKRALSTESSAVANSTLRRVVQFTALGGVKTVRRHATV