NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212168_1020852

Scaffold Ga0212168_1020852


Overview

Basic Information
Taxon OID3300020231 Open in IMG/M
Scaffold IDGa0212168_1020852 Open in IMG/M
Source Dataset NameDeep-sea sediment microbial communities from the Mariana Trench, Pacific Ocean - CR04
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJGI facility at Oak Ridge National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3631
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Microbial Communities From The Pacific Ocean Trenches

Source Dataset Sampling Location
Location NameMariana Trench, Pacific Ocean
CoordinatesLat. (o)12.47649Long. (o)144.86485Alt. (m)Depth (m)7939
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025751Metagenome200Y
F071263Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0212168_10208522F071263AGGAMDRLRDLCELARDVGESLESLIRYGASGELSILVIAEDWPVRLGDNTVDVVKGSVFLVPEDLLRGMNAQYTRVSKVRRPNDDEILMLGEPMDVNRGIHFVTAEEAERFSRAHALTLRSIGDTPPYLNPNHDFYSKELAVAVKAWVALFADGSFERGFSTPRQHIERWLRAGKFDLDENAKQRIATLVNPKKSKKGGTRTTLAE
Ga0212168_10208524F025751GGAMDSETRMWERLWVILAEDDWDQIVYVYGVDRSGRTIKPFLAKWALHAELLESIRNEFGAGVYHLMIRQGKTMRFTGTIGLGPRPGEPWPDDWSG

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