NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212167_1247491

Scaffold Ga0212167_1247491


Overview

Basic Information
Taxon OID3300020230 Open in IMG/M
Scaffold IDGa0212167_1247491 Open in IMG/M
Source Dataset NameDeep-sea sediment microbial communities from the Mariana Trench, Pacific Ocean - CR02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJGI facility at Oak Ridge National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3000
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Microbial Communities From The Pacific Ocean Trenches

Source Dataset Sampling Location
Location NameMariana Trench, Pacific Ocean
CoordinatesLat. (o)12.63117Long. (o)144.72149Alt. (m)Depth (m)6844
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074900Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0212167_12474913F074900AGGAGMAAKIVNLADPDESATLCATVEEAKETLAAMVERYESQGYRIAEQHLPDADYPQYAVYDLGDSWIGTYTIILQ

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