NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194042_1057500

Scaffold Ga0194042_1057500


Overview

Basic Information
Taxon OID3300020229 Open in IMG/M
Scaffold IDGa0194042_1057500 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-12m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1026
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.775Long. (o)-93.818Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050053Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0194042_10575001F050053N/AMGKVDDIIFDKPIITIEEYPEIMWKRITTDKYIKRRRITVTIMVSISASEEDIEEEAIDTWKEICRSKHIVNNNIVKASEWQQLLQQRLLDIAYEQRKMKVRKITKYQQDNNIKPYDLVQNENLSFDIPSIKVNEYPGYVFISKMMRVGTYQDKSITIKILAPISINDDYIMQQSQLLWKYVCQPNWFKSNIQRGLKWQELLQNHLIKQSRKPSIENSYEENIKLVKQAIKIKTEPNTSTTKTVTDNNDEDIEMITID
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