NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194042_1032363

Scaffold Ga0194042_1032363


Overview

Basic Information
Taxon OID3300020229 Open in IMG/M
Scaffold IDGa0194042_1032363 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-12m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1377
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.775Long. (o)-93.818Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070850Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0194042_10323631F070850AGGMTEELTTTTQSTAPTTGVVLLAFGKVQYYWAAFNLAFSIKKHSPNVSITVLFDDVLKAVSQCPEIVKYVEHFADINPADIYTNKKLDPGKVKVNLYKYLPYDCNLYLDVDAVALKDIQPMIDELAQSGKYYISHCVGYHTIDKGRDFKEMQWAYADKMWSHFDLPSDAVMPAINSSMQWIVKGSQTQELYQQARHLYMDKTMEAKDLRQKWGGGQPDELYMNVALAILGIDPALKAYEKIKGSEGGMIHFSMQRGLNFQEIIDNYYLQSYYGGAGFTPRFYIDWLDRMLAADFKAIGSRHIYQLARIAENKYADGKR

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