Basic Information | |
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Taxon OID | 3300020229 Open in IMG/M |
Scaffold ID | Ga0194042_1019426 Open in IMG/M |
Source Dataset Name | Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-12m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1806 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Ontario | |||||||
Coordinates | Lat. (o) | 49.775 | Long. (o) | -93.818 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F024717 | Metagenome | 204 | Y |
F048156 | Metagenome / Metatranscriptome | 148 | N |
F052407 | Metagenome | 142 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0194042_10194261 | F052407 | N/A | KKADTVVESKRIGQVLTNASNVDLAVGAGKYTGIRVTIDPNTSSFLNFYLSNFKIDIYTMAVPVEIFVYDMTTLKLIDSFFYQSEAVEQFIGKTFKANRRKMDLAFVYESLYDTTKMIPKKGSCTDCGGSLRAVHVCPFVDAIGIELTTDGFNVLSSKAKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLTISPNQRVNTTVSVNTGFATSDPNDGMIAGRDIAATRYNEELTAMLQNMRLPDDNTCFDCRRNMKYVTALP |
Ga0194042_10194262 | F024717 | N/A | MATPKQISERIDGLFSEWSGGFTPLFVAVLDMRREMYIRIFGIDTGRGQNQAGNFLPTVKYTTAYAKIKAKNGKPPLELTGFLKRSFGTDQSSVSNQGFTSFIYLQADEAGKALGLEKGVASGNPKYKTFKGYGTIFQPTKEEQDAMLQIHADLLVEEISNQISKP |
Ga0194042_10194263 | F048156 | N/A | MNLLKTIIERLNQRVEVANIFDKQFGLCELNANGNDKAWVHYIGNGQAEVVTNFDAKQGTLFWAKRGKVTVVKTDAYKVSGCKQLYITSFPLTAYAVVRKSHLPCDAEDAQDWLASRIYKITSGTDPLFKQSIGVINFEVIPSGYINEIKTLTANYEWAW |
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