NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194042_1017943

Scaffold Ga0194042_1017943


Overview

Basic Information
Taxon OID3300020229 Open in IMG/M
Scaffold IDGa0194042_1017943 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-12m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1885
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.775Long. (o)-93.818Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060610Metagenome132Y
F079784Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0194042_10179431F079784N/AFTCGAMTRKPVSKFKQVLDILLKYWRPTIGSLVILGSVFALIFKQITTETLAAIVAAMVAAGYIPKSSGNG
Ga0194042_10179432F060610AGCAGMDDGKDSVQVITTLDEGCVVGIGCKVHTHHHRIEVKPQVIYQSMEKFTIFGKNYCTNQWGQTYEMPPTDIVPEPQPMQKIYASDTITPTTSAFLLTPKPEAKIIIKPRTEFAEYQRTMDAPIMGMLLTFTIYLTAQWAWSSMSAWSNLCSELNQCLRSSS
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