Scaffold Ga0194042_1002320

Overview

Basic Information

• Taxon OID: 3300020229
• Scaffold ID: Ga0194042_1002320
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-12m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5962
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → unclassified Pedobacter → Pedobacter sp. SG918 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.775
  • Long. (^o): -93.818

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025680	Metagenome	200	N
F057894	Metagenome	135	N
F059603	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194042_100232011	F025680	N/A	MKYIKELKGRLRSLLGNKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGAEMELILGEMEKALGAGLSNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWLVRDDENPNIVNSDIHNYKLELFEQLSKGGAKDFFSGLGIDPLMPLLTMSPEDFQTLWEYNLVQQRNLKESLFRLSSHRDNGRKKQATT
Ga0194042_10023202	F059603	N/A	MTTEEKIIKTMNEWYPIEGKIVDGCVTYHSTQRTHESFRQHLMNADPESIVYTYYLSRCAKWIKTLKLHNQKLIPIFVPNGTED
Ga0194042_10023204	F057894	N/A	MAANRWRSGYMRLQDDAFTGYLTPIGSVQDVEVTFKIKAMQKIMEASEDLQVEAPNEYLIGSLRDNDAGYKTADVIIYNKVVRLKLTEEDIKRSKTLSL