Scaffold Ga0194042_1000005

Overview

Basic Information

• Taxon OID: 3300020229
• Scaffold ID: Ga0194042_1000005
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-12m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 94385
• Total Scaffold Genes: 124
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (40.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.775
  • Long. (^o): -93.818

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031849	Metagenome	181	Y
F062698	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194042_100000582	F031849	N/A	MANIKPLDPRITDKFADKAPRVSDHHDKPRILGLDVTDPDVGNTDTVDPDTLKVRRTFKDAQQAHSAYRRLKQQNVERNRKNQLIQKKLNNEPPYQPKKLESMGQNWRSNRPTGFLSTMVSRIQPPFREVIEQAATLTFAKYPVDGIDTEHKTKVFRNAITKCIRGWNGFDDLVAQTVHENTTFGYCGWCWDDTRDWKPEFLRQDYTFFSIETPMLSDATPIWARKRRYQIAELLPILENEQMSILAGWHIKNLVKAINNAIPAGRTLDADDDARRYEDWQREGSYGASYENDAKYVELGEILVKEPHGKISRFLFDDKSGDEICTQVDRYNRMSETLALFAIEIGSGNLMSSRGAGRDLYNTHVAVDKARNLVVDNSYIKGLLLLKKGPTAKPNMAPLTVHHPVAFVSEGYDVVPQGLPANVEDFLQLDRFVSQLAEIQVGTFLPGSPVETQGKKTASEVNRVAAIENQLRQGVLMRFSRQFSHGVERMQRGICHPEHLKAAADLKGKLDLARQVEKFAIWARREVVDAFDRSMLELPPFLIPFEIPEHLDEDAINCCLEMIEKNISPADILLMAYSPASELIPDNSAQDNQILDVMVQRYMGNPNINQDALMKMDWVKKLGETTANEVILPKDQVEAMAIEATRQQIIELQSIIAGQDIPVSPRDNDQVHLDTMVQKLMPAVQGVPAGGLTPEFVMMLTKAMEHFGMHIQAAEAKGMPSDAVGKYKQMYRQAHDHLTKGHNTPPPPDLTPAAAHQGGRPQQTAAAQKQMGEVYTQQTPNQNAMISGVATPPRPPTAA
Ga0194042_100000588	F062698	AGGGGG	MILSPRGRRPPSYVMNLKEEGIDIGLAIAGLFGSVLMSSKTSGQSLIATIASLVGGAASANYVTPLLLKISHLDSDPHYGYAAAFLLGFCGLRAVETISNKIFTPTQDEPINRNQRRR
Ga0194042_10000059	F031849	N/A	MATSSTIKPLDPRITDAFADKAPRVSDTHDKPRVLGLDVRDPDNGNMDTVDPETLTVRRTFKDALQAHSAYRRLKQQNVERNRKNQMIQKKLNNEPPYSPKKLESMGQNWRSNRPTGFLSTMVSRIQPPFKAVIEQTPTLTFAKHPLDEIDSDHKTKTFREAITKCIRGWSGFDDLVAQTVHENTTFGFCAWCWDDLRDWKAEFLRQDYTFFSIETPQVTDATPIWARKRRYQIAELLPILERPNYSAAAGWHINNLVRSINNAIPAGRTLDADDDARRYEDWIREGSYGASYENDAKYVELGEILVKEPHGKISRFLFDDKSGDEICTQLDRYNKMSETLALFAVEIGSGGLMSSRGAGRDLYNTHISVDKARNLVVDNAYLKGLLLLKKLPTAKPNAAPLTVHHPIAYISEGYEVVPGNLPADIDDFLKLDQFVSQLAEIQVGTFLPGSPVETQQRKTASEVNRVAAIENQLRQGILMRFSRQFSHGIERMQRGICHPEHLKAAADLKGKLDLARQHQEGAIWARREVVDSFDRSHMELPPFLVPFEVPEHLDEDAINCCLEMLEHNVPPADILLMAFSPAMELLQDTTAQDNQILDMMIQRYTGNPGINQDELMKLDWIRKMGETVANQVILPKDSIEAIAIEATRQQIIELQSIIAGQEIPVSPRDNDGVHLDTLMLKLMPVVQAIPPGGLPPEGVPPFVQALKHFNEHIAAAEVKGADKKALQKYKEAYYQAAAHLTKGHNGPPVPDIAPAAAHGGGGHHPAAPRPSAARQKIAGEIYGQNSQSQAGLVNNIANPPKPPTAG