Scaffold Ga0182118_101113

Overview

Basic Information

• Taxon OID: 3300020223
• Scaffold ID: Ga0182118_101113
• Source Dataset Name: Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_31MAY2016_LD2 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1058
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013855	Metagenome / Metatranscriptome	267	Y
F028398	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182118_1011131	F028398	N/A	MVPNAPKPYETHQNRSLGSDGMNSMDLLQKFLMQLCGLNFYINYNSSARFEASIVKQRNGPKCTQTLRNKTKHEFRV
Ga0182118_1011132	F013855	N/A	AQXGWIGCVHCENIXRDFVAXTFAFIAPVQPILHRVSCTNKMVQNAPKHYETHQNMSLRSDGVDRADLLQKILTQLCGLNFYINYNSSARVELSIVKQRNGPKCPQTLQNKTKHEFRVQWGWINCIRCEKFGHDFVAXTFALIALVQPILHRVSCTNEMVPNAPKHYENATKDEFRVQWGGSGAFIVKTSGTTSWHELLH