Scaffold Ga0194127_10004874

Overview

Basic Information

• Taxon OID: 3300020221
• Scaffold ID: Ga0194127_10004874
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015036 Kigoma Deep Cast 100m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16134
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -4.9054
  • Long. (^o): 29.4853
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004789	Metagenome / Metatranscriptome	423	Y
F026542	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194127_1000487412	F004789	GGAG	MSSLGPTVNPVQKWCWSFCPSCNRCQDKGTYTRCNSCSGRYDPNLTIPVDNQDFCDCKNGVLRWKTQQGKLIVTKFKSNPFNFQVKYEKKTEDERDWDSYVKDMREKLDDPSWNPITIYE
Ga0194127_100048745	F026542	GGAG	MNSSTLEKLQEMLQQFLGPQLKEVIDAYSDNNNSYKYFIEIPETDVVDLGIEEIASLVARTSNVYGRAARFTGIARAQYKILEGKYKKVYKSNRIGKNEAEREAAAMDAAEDEYFALITCEAIVHLAEAMESAARIASESARKLMDKIQSMQVASFREDKGSFMDSDFFNTY